FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2829111
Sequences flagged as poor quality0
Sequence length49-150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAAACGT5750.00131987379.3254191
CGCCGTA9300.07.9212875140-144
GTCGCCG10600.07.6687555140-144
TGGTCGC11600.07.6646233140-144
GCCGTAT11000.07.6208253140-144
GGTCGCC12400.06.9652705140-144
TCGCCGT9651.8189894E-126.8351483135-139
CGGCGTG3908.7841775E-46.7650447135-139
CGTATCA12450.06.733259140-144
CCGTATC10700.06.575371135-139
GTGGTCG13100.06.399166140-144
TAGCACC11950.00351516135.9811449
CGGTGGT14950.05.488783130-134
GCGTGAG14450.0048210425.35958152
GGCGTGA17000.00104357595.25697661
GGGGGGG501150.05.0942364140-144
Produced by FastQC (version 0.11.5)