FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences704403
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGTGT800.006913759728.2404697
CCGGCCA1500.00635591818.826989
CGGATGC1352.117961E-517.928822140-144
TCGGATG1450.004783801314.4626465140-144
GGGGGGG165150.012.658872140-144
TTGGACT4607.9629244E-411.700619140-144
CCCTTAA4350.002146805410.3909861
CGTGAAA3501.6661429E-49.986114140-144
CCCAGAG9053.246223E-79.3648051
TGCGTGA2600.0053362989.3091955140-144
TTCTGCG2250.00608923669.16122135-139
GCGTGAA3100.0069175589.019715140-144
GGCGGGG3558.147481E-48.522503140-144
CAAGGAG6250.0045392698.1361441
CAATGAA9951.1677723E-57.94988871
CTAAAGT6650.0079200727.6467511
TGCCGTC11800.07.367659130-134
GCCGTCT9850.07.3551927130-134
CGTCTTC10501.8189894E-117.203544140-144
TGGGGGG6351.5459962E-57.1468234140-144
Produced by FastQC (version 0.11.5)