FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1738384
Sequences flagged as poor quality0
Sequence length49-150
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTCGT1450.0057395311.119064140-144
GCCGTCG1450.0057395311.119064140-144
TATGCCG9750.07.3231063140-144
GGGGGGG203100.06.872281140-144
TCTCGTA11009.113137E-105.86278140-144
CGTCTTC8703.2331263E-75.824272140-144
CGTATGC10409.28776E-95.758087140-144
ATGCCGT10102.9602234E-85.701076140-144
AAAATCG6752.540546E-45.45952140-144
AATCTCG13956.184564E-115.4485126140-144
CTCGTAT10659.35197E-85.406655140-144
CATGAGC15450.0043938035.4016813
CACCAGG16900.00216212995.3196171
TGCCGTC9705.7742E-85.3089585135-139
AGGGGGG13102.066372E-95.274584140-144
TCGTATG10902.921297E-95.20349130-134
ACACGTC32550.05.094713140-144
GCCGTCT8605.413415E-55.088542140-144
Produced by FastQC (version 0.11.5)