FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1636851
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGCGG457.23113E-444.748245140-144
GGGTTCG1205.4922013E-542.44475135-139
CGCGGGG1459.737564E-426.008795140-144
GCCGTAA1350.006725776518.645103140-144
CGCCGTA12150.014.916081140-144
GGGGGGG345700.014.722458140-144
GCCGTAT12800.012.978739140-144
GGTCGCC13750.012.81427140-144
GTCGCCG13200.012.5854435140-144
GGGCGGG9200.012.03825140-144
GCGGGGG9101.8189894E-1211.617332140-144
CGTATCA13050.011.572823140-144
TGGGGGG23750.011.44613140-144
AGGGGGG16600.011.2207575140-144
TCGGTGG14750.010.7451105135-139
TCGCCGT12250.010.684785140-144
AGCGGGG3350.00866138910.5191765140-144
TGGTCGC13550.010.465475135-139
GTGGGGG23600.010.452318140-144
GTGGTCG13750.010.009919135-139
Produced by FastQC (version 0.11.5)