FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences889978
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGCCG350.00695056652.501833
TAGGCGG700.00608248418.972996140-144
GTCCGTA450.001631022116.9974555-59
GGGGGGG146800.011.218365140-144
CTAACAG5557.377109E-49.935571
TCGTATG17900.09.79388140-144
CGTATGC17450.09.285351140-144
CTCAAGC6050.0016238759.1144491
CCGTCTT14600.08.36891140-144
CACCAAG7450.00115919758.2240741
CTCGTAT17450.08.219818140-144
CGTCTTC13700.08.143154140-144
ATTGCCA7700.00161043547.95482256
TATGCCG16050.07.9438334140-144
CACCTGC7900.00206712567.75561331
TGCCGTC14850.07.691409140-144
GTATGCC19000.07.6890554140-144
TCTCGTA17350.07.6548104140-144
ATGCCGT15350.07.613919140-144
GCCGTCT14250.07.4560547140-144
Produced by FastQC (version 0.11.5)