FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences620908
Sequences flagged as poor quality0
Sequence length49-150
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTAA300.0040494953174.79059120-124
TATATCG550.005938731654.620667140-144
GCGGCGG450.006085525354.28757135-139
TGGCGGA650.001459220338.79037125-129
GGGGGGG113000.033.940544140-144
GGCGGGG1500.00447735530.856346140-144
AGGGGGG4456.0754246E-1021.959017135-139
CGTCTTC5154.3655746E-1119.5034130-134
AAGGGGG4652.4056135E-819.26333135-139
TGGGGGG5106.927803E-817.563623135-139
CCGTCTT5151.7991624E-816.717201130-134
GCCGTCT5202.026718E-816.55646130-134
TCGTATG5553.2770422E-616.238577140-144
GCTTGAA8356.681148E-915.59033140-144
GGGGGGT2800.003180587715.373855130-134
TATGCCG5358.4928615E-915.316759125-129
GGGGTGG4655.7914684E-415.074521140-144
TGCCGTC5254.075173E-715.032214130-134
CTGCTTG7505.284128E-714.686891140-144
CTCGTAT5251.1188604E-714.407853125-129
Produced by FastQC (version 0.11.5)