FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1187317
Sequences flagged as poor quality0
Sequence length49-150
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA1750.001105999711.253429140-144
GCGGAAG2250.00113832728.240787135-139
GGTCGCC2450.0066560917.798487140-144
CAGCTAC10804.107452E-47.22930053
CACACAT18953.710088E-55.8370951
CACACAC36658.85484E-95.14850431
Produced by FastQC (version 0.11.5)