FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1738791
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTCGG350.0085636549.80332140-144
TCGCCGG754.6633976E-429.501171130-134
AGCGACT1750.001257573824.892365140-144
GGGGGGG526800.014.371555140-144
GTCGCCG15800.013.606605140-144
CGCCGTA15200.012.99692140-144
GAGCGAC3200.002109242412.710224140-144
CGGGGGG7801.8189894E-1212.395839135-139
TCGAGTA2109.881465E-412.240889140-144
CGTATCA15250.012.192289140-144
GCCGTAT15750.012.174145140-144
TCGGTGG18150.011.844868140-144
GGTCGCC16250.011.799557140-144
AGCGACG2400.00385418111.728234125-129
CCGTATC14800.011.660935130-134
TGGTCGC16000.011.620775140-144
GGGGGCG7006.614391E-811.620774140-144
GTGGTCG16650.011.516084140-144
ACGGTGG4100.001038667611.337341140-144
CTCGGTG18050.011.26668140-144
Produced by FastQC (version 0.11.5)