FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409565
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCACG550.00221730335.622272140-144
GGGGGGG79250.016.996433140-144
AGGGGGG3553.6592246E-715.177096140-144
TATCTCG5006.490154E-913.714577140-144
CTGCTTG5302.0498555E-712.014116140-144
AGTCACG7054.5474735E-1011.810932140-144
CGTCTTC4503.2640928E-610.907225135-139
GCCGTCT4553.726076E-610.787365135-139
CAGTCAC9555.456968E-1210.770609140-144
CCGTCTT4654.832824E-610.555378135-139
ATGCCGT4654.832824E-610.555378135-139
TGCCGTC4355.999953E-610.366381130-134
GCTTATA7552.419256E-1010.2932415135-139
TCGTATG4805.6865407E-510.204297140-144
ATATCTC6754.195408E-710.158945140-144
TATATCT8551.3746649E-79.929712140-144
TCTCGTA4650.00113114179.480122140-144
CAAGAAT5053.0031858E-49.4148763
TATGCCG4801.9319032E-59.394532130-134
CGTATGC4952.7780772E-59.109849130-134
Produced by FastQC (version 0.11.5)