FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences643898
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTGGC4900.0052376739.3289897
GCCGTAT2853.9723222E-49.1592865140-144
CCTGGCA5050.00671163159.0518898
CCCTGGA5150.0078679898.8781941
CGGTGGT2800.00179954657.866578130-134
TCGGTGG2800.00179954657.866578130-134
TGGTCGC3100.00353470827.3431435135-139
CAGAAAG11002.99121E-46.75448941
GGTCGCC3150.0082421436.7300024125-129
CGGTTTG4550.00336852256.0036244135-139
GGGGGGG130000.05.8231926140-144
ACGGTTT5150.0021119835.746188135-139
CAAAGAA18001.21010584E-45.3978181
GTGGGGG8351.5350876E-45.31458140-144
Produced by FastQC (version 0.11.5)