FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2115277
Sequences flagged as poor quality0
Sequence length49-150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGAGC2800.002992792521.444763140-144
CGCCGTA6750.08.879031130-134
GCCGTAT8000.08.324091130-134
TCGCCGT6757.2759576E-128.221325130-134
CCGTATC7401.8189894E-128.099116130-134
GTCGCCG7451.8189894E-128.04476130-134
CGTATCA8651.8189894E-127.5425224135-139
GGCGTGA12401.9078638E-57.04110961
GCCACCG9955.7573844E-47.01988031
CCCTACA9550.00289281436.7015627
TGGTCGC8658.78772E-86.5681825140-144
GGTCGCC8451.3023964E-96.567331130-134
GTGGTCG9204.0454324E-96.4695916140-144
CGTGAGC10900.00162572186.4065413
GCGTGAG11300.0024331426.1809292
CGGTGGT10201.891749E-106.0084457125-129
GCCACCT14000.00436456555.404891
TCGGTGG10403.360219E-85.232911120-124
TCGTGTA12601.0802978E-85.1089664130-134
GGGGGGG374750.05.046352140-144
Produced by FastQC (version 0.11.5)