FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences943155
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCACT600.007128495752.1625135-139
ACTCGGT900.004295814331.127632135-139
CGGGGTG1700.0097482717.480907140-144
GTGGTCG8450.014.655519140-144
GCCGTAT6950.012.900918135-139
GGGGGGG235650.012.6125145140-144
CGCCGTA6801.4406396E-912.141091140-144
TGGTCGC7655.820766E-1112.141091140-144
GGCGGGG4252.2815431E-512.14109140-144
GTCGCCG7257.2759576E-1212.099226140-144
CCGTATC6801.6370905E-1111.929736135-139
CGTATCA7350.011.2325735140-144
CGGTGGT9201.2914825E-1010.656446140-144
GGTCGCC7751.8189894E-1210.58085130-134
AGGGGGG10600.010.222569140-144
TCGGTGG9253.6379788E-1210.154699135-139
TCGCCGT6653.0686351E-99.671168125-129
TGGGGGG12605.456968E-129.418982140-144
GGTGGTC11801.3096724E-109.182986140-144
TCTCGGT9153.6434358E-99.022887140-144
Produced by FastQC (version 0.11.5)