FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1151362
Sequences flagged as poor quality0
Sequence length49-150
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGC756.249402E-419.608007140-144
CGCGTCG900.005678889314.094679135-139
CGCCGTA2906.574064E-710.987246140-144
GGTCGCC3601.012364E-69.53167140-144
GCCGTAT3101.727621E-59.487745140-144
TCGCCGT2701.9372246E-59.396453135-139
GTCGCCG3058.1108396E-58.839675140-144
CGTATCA4208.6539876E-78.753575140-144
CCGTATC3000.00304600928.5055485140-144
GTGGTCG3902.8500519E-58.170003140-144
TGGTCGC3303.516317E-48.170003140-144
CTCAACC7350.0095937857.4851331
GTCAAGA9350.00137244067.1915991
TCGGTGG4806.1430346E-67.04734135-139
CCCACCC13906.288883E-67.03485633
CCCATGG8750.0057385576.98612451
GGCATGA12305.1530416E-46.46074531
CGGTGGT4601.9034317E-46.4345274135-139
GCGGGGG7353.5206138E-45.335512140-144
CAAAAGT17359.70301E-45.2848921
Produced by FastQC (version 0.11.5)