FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1837893
Sequences flagged as poor quality0
Sequence length49-150
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCCGG900.00479364119.771175130-134
CCCCGGA2050.00645730213.8236031
GGGCGGT2000.001318610913.5292225135-139
TATCGGT1450.002519114212.414027110-114
GCCGTAT14600.012.288012140-144
GGGGGGG441250.012.197504140-144
GTCGCCG14850.011.771369140-144
CGTATCA15300.011.425153140-144
CGCCGTA14300.010.542252135-139
AGGGGGG20750.010.419565140-144
GGTCGCC16050.010.318043140-144
GTGGTCG16650.010.222505140-144
CGGTGGT18500.09.697565140-144
TGGGGGG25200.09.6748705140-144
TCGCCGT13800.09.6276455140-144
CCGTATC14500.09.597083135-139
AGCGGCG2450.0064180149.103317115-119
TGGTCGC15400.09.036216135-139
TCGGTGG18350.08.774085140-144
CTCGGTG19000.08.71603140-144
Produced by FastQC (version 0.11.5)