FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1426633
Sequences flagged as poor quality0
Sequence length49-150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGGAC1350.00648590410.937784135-139
GGGGGGG185900.09.371866140-144
ATGATCC8800.0064840156.8989035
CGTATGC18600.06.8217797140-144
TCGTATG18800.06.619415140-144
CTCAAAC14901.9328596E-56.52083161
CCACATA12205.06022E-46.47072361
AGGGGGG13850.06.3424935140-144
CTCGTAT17950.06.253176140-144
AAGGGGG16350.05.8204174140-144
CGGTGAT21000.05.693562140-144
TATGCCG17150.05.6911907140-144
TGCCGTC16750.05.681422140-144
CCGTCTT15553.6379788E-125.4921823140-144
GCCGTCT15850.05.456569135-139
TCTCGTA17050.05.438342140-144
CGGGGGG9759.2686605E-85.4087944135-139
CGTCTTC16700.05.406205140-144
CTCCAGC26157.0558053E-75.3410351
ATGCCGT17050.05.339713130-134
Produced by FastQC (version 0.11.5)