FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2267429
Sequences flagged as poor quality0
Sequence length49-150
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCGCT1650.003729838215.01565130-134
GGGGGGG266100.08.98706140-144
CACGCAC5050.0094844728.6795791
GGTCGCC11105.456968E-127.5841675140-144
CCGTATC9551.8189894E-127.5205054135-139
CGCCGTA9901.07320375E-107.2436886140-144
GTGGTCG11651.6370905E-117.2261167140-144
GTCGCCG10052.0918378E-107.135574140-144
GCCGTAT10453.8016879E-106.862442140-144
TCGCCGT9806.2573235E-106.785792135-139
CGTATCA10803.0195224E-106.640048140-144
GAGCGAC4150.00148160136.4599357120-124
CGGTGGT14002.910383E-116.458581140-144
TCGGTGG13751.2914825E-106.3492503140-144
TGGTCGC10652.6162525E-86.1480417140-144
CTCGGTG13901.0986696E-96.0564218140-144
GCGGGGG11855.7225407E-86.051689140-144
GGGGGGT20700.06.024996140-144
GATCTCG15302.8558134E-105.9098125140-144
TGGGGGG26400.05.905181140-144
Produced by FastQC (version 0.11.5)