FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17981259
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA10550.08.78860646-47
GCCGTAT11050.08.60698248-49
GTCGCCG11200.07.853934344-45
TCGCCGT11250.07.60777746-47
TAGATCG30400.06.717894-95
TCGCACG7251.8392675E-66.22328458-59
GGTCGCC18850.05.927752544-45
AGATCGG94200.05.57113394-95
GATCGGA83400.05.55227294-95
TGGTCGC15851.8189894E-125.54947442-43
CGTATCA18250.05.47251350-51
AGCGTCG49250.05.06273694-95
GCGTCGT43900.05.0306194-95
Produced by FastQC (version 0.11.5)