FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26702821
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA72450.023.03765146-47
GCCGTAT76750.020.47866848-49
CCGTATC82250.020.40824348-49
CGTATCA77900.020.0852450-51
GTCGCCG84950.019.8710244-45
TCGCCGT80700.018.85844246-47
TGGTCGC93000.017.0022242-43
GGTCGCC101250.015.59339144-45
GTGGTCG113850.013.70082642-43
AGAGCGT243400.012.8141729
GATCTCG148550.012.59420634-35
TCTCGGT134800.012.52255236-37
TCGGTGG148050.011.97887338-39
GTATCAT145950.011.74524650-51
CGGTGGT144350.011.28292640-41
TCGTGTA154250.010.94591214-15
CGTCGTG159250.010.86076512-13
ATCTCGG163200.010.43066936-37
AAGAGCG307850.010.4119938
TAGATCT176150.010.36501432-33
Produced by FastQC (version 0.11.5)