FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58758763
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG1113850.06.451034594-95
TCGTGTA960100.06.431185294-95
AGCGTCG1290000.06.366666394-95
GCGTCGT1179900.06.351365694-95
GTCGTGT1051850.06.30788294-95
TAGATCG789750.06.288973394-95
AGAGCGT1552600.06.255792694-95
GAGCGTC1455450.06.189122794-95
ATCGGAA2328950.06.162427494-95
GATCGGA2472750.06.121707494-95
AAGAGCG1703650.06.107864494-95
CGTGTAG926000.06.086292794-95
AGATCGG2679300.06.04302294-95
TCGGAAG2261500.05.969521594-95
CGGAAGA2175150.05.853029794-95
AAGATCG750600.05.507313794-95
CAGATCG780150.05.383879794-95
GTGTAGG997400.05.376990394-95
GTAGGGA929450.05.11648794-95
GAGATCG864100.05.088755694-95
Produced by FastQC (version 0.11.5)