FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41837229
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG92950.07.997137594-95
TGGTCGC591600.07.731570294-95
GGTCGCC554900.07.369839794-95
GTGGTCG670100.07.368082594-95
GTCGCCG495700.07.30618394-95
CGTATCA319100.07.27122194-95
TCGCCGT433250.07.10953294-95
CGCCGTA399300.07.06572594-95
CCGTATC363200.07.035679394-95
GCCGTAT367700.06.910822494-95
TCGGTGG919850.06.66620894-95
CTCGGTG1013300.06.503760394-95
CGGTGGT839050.06.42223694-95
TCTCGGT1030050.06.393389794-95
GATCTCG1278100.06.27860294-95
ATCTCGG1220100.06.261742694-95
TAGATCT1453100.06.040544594-95
GTCGTGA58750.05.901801694-95
AGATCTC1467050.05.894071694-95
GGTGGTC921400.05.812165394-95
Produced by FastQC (version 0.11.5)