FastQCFastQC Report
Thu 12 May 2022
EGAF00005330587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30730105
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC3973781.2931228188123665TruSeq Adapter, Index 3 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATG1423760.46331114065506773TruSeq Adapter, Index 3 (100% over 49bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)