FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55492949
Sequences flagged as poor quality0
Sequence length101
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCCCCC5415500.035.16995274-75
TGGGGGG7488350.033.11773374-75
GAAAAAA4811700.032.9604374-75
GCCCCCC6530200.032.85336774-75
CTTTTTT6197050.032.57988474-75
CAAAAAA5666900.031.51594574-75
AGGGGGG8134400.031.36133874-75
GTTTTTT3718700.031.13729974-75
TAAAAAA2837700.030.81831774-75
ATTTTTT4047450.030.54450874-75
ACCCCCC5328050.028.90631174-75
CGAAAAA417800.028.33844474-75
GCTTTTT1564000.028.10927474-75
GCAAAAA1429250.027.69106174-75
CGTTTTT458100.027.5416474-75
CCAAAAA1686500.027.34309474-75
CGCAAAA182050.027.20603272-73
CGCTTTT243750.026.95066372-73
CCTTTTT1885900.026.8984874-75
GCGAAAA145050.026.84933772-73
Produced by FastQC (version 0.11.5)