FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12801739
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC70050.07.458515694-95
TCGTATG76000.07.312066694-95
TATGCCG59500.07.22436294-95
CTCGTAT78300.07.15794294-95
AATCTCG102700.06.659781594-95
TCTCGTA86100.06.150913292-93
GTATGCC84700.05.97219794-95
ATGCCGT64650.05.914189394-95
ATCTCGT98700.05.84691894-95
GCCGTCT67200.05.47772694-95
CCGTCTT68100.05.230967594-95
AGTCAAC205900.05.005774594-95
CAATCTC162800.05.003542494-95
Produced by FastQC (version 0.11.5)