EGAF00005330868 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005330868
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12801739
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	5555	0.0	8.937458	94-95
GCCGTAT	5325	0.0	8.351373	94-95
CCGTATC	5150	0.0	7.721384	94-95
CGTATCA	4610	0.0	7.50295	94-95
TCGCCGT	6880	0.0	7.421419	94-95
GTCGCCG	8200	0.0	6.9154243	94-95
GTGGTCG	10245	0.0	6.890091	94-95
TGGTCGC	8930	0.0	6.112969	94-95
CGGTGGT	13045	0.0	6.0966077	94-95
TCTCGGT	15145	0.0	5.9037776	94-95
TCGGTGG	14060	0.0	5.790372	94-95
GGTCGCC	8855	0.0	5.7661614	94-95
ATCTCGG	16920	0.0	5.7572575	94-95
GATCTCG	17255	0.0	5.672755	94-95
GTAGATC	20685	0.0	5.48286	94-95
CTCGGTG	16150	0.0	5.332418	94-95