FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9447231
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA24300.08.23204494-95
CCGTATC27050.07.482146794-95
GCCGTAT26950.07.11789592-93
CGCCGTA28800.06.94210692-93
GCGAAAT8450.0076748526.10351041
GATCGGG17251.938879E-75.9796711
GCTAAAC21209.59335E-95.75017641
GATACAA38350.05.74613951
GGTCGCG14055.749269E-55.67304561
GGTTATT36650.05.6288851
GGTTACT25154.6020432E-105.59276961
GGTCAAT29152.3646862E-115.46869951
TCGCCGT37150.05.454327690-91
GGTTAAA43900.05.4468991
GTCAACT31951.8189894E-125.4296841
GGTAAAA65700.05.4236531
GGTTCTA26101.193257E-95.38920161
GCTAGGC25604.152753E-95.3113111
GGTCCGA18604.8776365E-65.29358671
GGACTAT25704.5729394E-95.2906441
Produced by FastQC (version 0.11.5)