FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36402271
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG415650.07.787231494-95
ATGCCGT405350.07.50204294-95
CGTATGC495900.07.407151794-95
TCGTATG538900.07.29329194-95
TGCCGTC398250.07.209274394-95
TCCGATC39950.07.08599668
CTCGTAT549700.06.91395594-95
GCCGTCT360200.06.785358494-95
GTATGCC515400.06.769872794-95
TCTCGTA594350.06.493783594-95
ATCTCGT649800.06.371683694-95
CCGTCTT349950.06.282994394-95
GATCTCG720900.05.910163494-95
CGTCTTC371800.05.88837394-95
CCCGATC813800.05.84136294-95
CCGATCT771700.05.777900794-95
CGATCTC769500.05.53075894-95
TCCCGAT922400.05.43751894-95
CGTCCCG1054600.05.380022594-95
TTCCGAT54750.05.3428637
Produced by FastQC (version 0.11.5)