Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005330880 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20532 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 68 | 0.3311903370348724 | Illumina Single End PCR Primer 1 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCGCC | 30 | 0.003838409 | 31.78079 | 90-91 |
TCGCCGT | 35 | 0.00815387 | 27.240673 | 92-93 |
CGGTGGT | 35 | 0.00815387 | 27.240673 | 86-87 |
GTGGTCG | 35 | 0.00815387 | 27.240673 | 88-89 |
GCCGTAT | 35 | 0.00815387 | 27.240673 | 94-95 |
GTAGATC | 65 | 0.0073930053 | 18.290022 | 78-79 |