FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14259870
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT38500.07.285281794-95
CGCCGTA39600.07.14293794-95
TCGCCGT52600.06.05541894-95
CCGTATC38850.05.934409692-93
CGTATCA35500.05.557440394-95
TGGTCGC63100.05.49982194-95
TCGGTGG108900.05.369480694-95
GTGGTCG76650.05.24082494-95
GTCGCCG66000.05.15011894-95
TCTCGGT109700.05.13497792-93
CGGTGGT98750.05.10297994-95
Produced by FastQC (version 0.11.5)