EGAF00005330888 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005330888
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47169168
Sequences flagged as poor quality	0
Sequence length	101
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	32395	0.0	8.195208	94-95
CGCCGTA	42450	0.0	7.788253	94-95
GCCGTAT	38245	0.0	7.6537824	94-95
CCGTATC	36650	0.0	7.566851	94-95
TCGCCGT	48790	0.0	6.9994955	94-95
GTCGCCG	57485	0.0	6.7358985	94-95
TGGTCGC	63170	0.0	6.639571	94-95
GGTCGCC	63375	0.0	6.5807242	94-95
GTATCAT	39165	0.0	6.373453	94-95
GTGGTCG	71365	0.0	6.0696087	94-95
TCGGTGG	95240	0.0	5.5924535	94-95
CGGTGGT	87250	0.0	5.3744254	94-95
ATCTCGG	110675	0.0	5.246905	94-95
TCTCGGT	99865	0.0	5.215047	92-93
CTCGGTG	105915	0.0	5.1316557	94-95
TATCATT	48355	0.0	5.1033883	94-95
ATCATTA	45255	0.0	5.102351	94-95
GATCTCG	115410	0.0	5.0295854	94-95