FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13593250
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA97500.09.62442994-95
GCCGTAT119550.09.2999194-95
CCGTATC111100.09.28021794-95
CGCCGTA132800.08.76557694-95
TCGCCGT156550.07.84548794-95
GTATCAT116050.07.533297594-95
TGGTCGC204750.07.472130394-95
GTCGCCG185350.07.267297394-95
GGTCGCC200600.07.15300394-95
GTGGTCG234200.06.75569194-95
TATCATT140700.05.92646194-95
ATCATTA126050.05.76714794-95
CGGTGGT284150.05.67646792-93
TCGGTGG311200.05.6108794-95
ATCTCGG365850.05.525975794-95
TCTCGGT335150.05.436740494-95
GTAGATC455000.05.2264394-95
TCATTAA141250.05.18017894-95
GATCTCG383050.05.160007594-95
CTCGGTG344750.05.13374794-95
Produced by FastQC (version 0.11.5)