FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15966661
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTTC463900.09.35171694-95
CCGTCTT488550.09.33188394-95
GCTTGAA207700.09.22601494-95
TGCCGTC602250.09.17874494-95
GCCGTCT541250.09.10765594-95
TGCTTGA238250.09.06954794-95
ATGCCGT646200.08.93295494-95
TATGCCG698550.08.58983694-95
GTCTTCT513750.08.03757194-95
CGTATGC840250.07.918387494-95
GTATGCC788450.07.878448594-95
TCGTATG914100.07.592979494-95
CTGCTTG312700.07.517689794-95
CTTGAAA223600.07.338094794-95
CTCGTAT959300.07.252542594-95
TCTCGTA1038500.07.074421494-95
CTTCTGC488500.06.941299494-95
TCTTCTG552200.06.845793294-95
TCTGCTT387450.06.81500694-95
TTCTGCT442600.06.69545894-95
Produced by FastQC (version 0.11.5)