FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48343818
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTCTA70200.010.95945694-95
CCGTCTT892600.08.18562294-95
GCCGTCT956700.08.0839494-95
ATGCCGT1115500.08.01875894-95
AGATCGA142250.07.96245894-95
TATGCCG1174950.07.83937594-95
CGTCTTC878950.07.6022394-95
TGCCGTC1054150.07.50106594-95
CGTATGC1398200.07.47077694-95
GTATGCC1354800.07.1264594-95
TCGTATG1515900.07.092787394-95
TATCGTA121150.07.07562694-95
CTCGTAT1553550.06.92853894-95
TCTCGTA1675400.06.644314394-95
TGCTTGA588900.06.495836394-95
ATCTCGT1811700.06.266333694-95
ATCGTAT126400.06.180589794-95
GCTTGAA528400.06.03074294-95
GATCTCG1971900.05.998086594-95
GATATCG153650.05.8262694-95
Produced by FastQC (version 0.11.5)