FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48343818
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA846200.08.64569794-95
GTCGTGA89300.08.41085394-95
GCCGTAT1025150.08.39316294-95
TCTCGGG197000.08.38538594-95
CCGTATC942150.08.25967794-95
GTATCAT892450.08.0245394-95
CGCCGTA1114700.07.97903294-95
TCGCCGT1229400.07.53427894-95
GTCGCCG1393100.07.31093694-95
ATCATTA869050.07.22864494-95
GCGTCGG130800.07.105153694-95
GGTCGCC1516400.06.99391394-95
TGGTCGC1601150.06.985932494-95
TATCATT956250.06.93236794-95
GTGGTCG1753100.06.558036394-95
TCATTAA893250.06.487316694-95
TCGTGTG123350.06.223974794-95
AGAGCGC159600.06.12087394-95
TCGGTGG2256350.05.980215594-95
GGTGGTC2073900.05.822108794-95
Produced by FastQC (version 0.11.5)