FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37863898
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG335550.07.42319694-95
CGTATGC388900.07.21692594-95
TCGTATG416700.06.997574394-95
CTCGTAT448350.06.80018294-95
GTATGCC416300.06.724810694-95
TCTCGTA494800.06.31537194-95
ATGCCGT361600.06.23832394-95
ATCTCGT554250.05.959284394-95
CATCTCG657800.05.54459794-95
GCCGTCT382900.05.53781994-95
CCGTCTT345650.05.481999494-95
CGCACAT744300.05.471277794-95
TGCCGTC414500.05.413522294-95
Produced by FastQC (version 0.11.5)