FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34500497
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC44950.013.7352048
TTCCGAT50100.012.9868637
CCGATCT70550.09.2896319
ACGCTCT85350.07.6820931
CTTCCGA109950.06.1336596
TAGATCG48250.05.955465394-95
GATCGGA166500.05.947705794-95
AGATCGG198350.05.77088694-95
CGCTCTT121200.05.7234182
ATCGGAA164000.05.66187894-95
Produced by FastQC (version 0.11.5)