FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005330974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005330974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1471277
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT2451.92781E-510.65951848-49
TGGTCGC3752.4680048E-810.12787242-43
CGCCGTA2705.6221746E-59.671700546-47
CGTATCA3001.7654449E-48.70794650-51
GTCGCCG3551.3066579E-58.69294144-45
CCGTATC3052.1186794E-48.56256448-49
TCGCCGT3102.528315E-48.42373946-47
GGTCGCC3954.9834016E-57.81264344-45
GTGGTCG4851.06155E-57.34140242-43
TAGATCG6200.00194289595.3654194-95
Produced by FastQC (version 0.11.5)