EGAF00005331034 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005331034
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4500285
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	1200	0.0	7.9142575	46-47
CCGTATC	1230	0.0	7.3358197	48-49
GCCGTAT	1150	0.0	7.025242	94-95
TCGCCGT	1400	0.0	6.9588265	94-95
GTCGCCG	1555	0.0	6.8764186	94-95
TGGTCGC	2020	0.0	6.8227086	94-95
TCTCGGT	3770	0.0	6.4919634	94-95
CGTATCA	975	1.0531949E-9	6.333383	50-51
GTGGTCG	2520	0.0	6.317634	94-95
GGTCGCC	1940	0.0	6.1241875	94-95
TCGGTGG	3335	0.0	5.5574937	94-95
GATCTCG	4460	0.0	5.48702	92-93
GTAGATC	6655	0.0	5.355788	94-95
ATCTCGG	4615	0.0	5.354782	94-95
AGTGTAG	6645	0.0	5.328089	94-95
CGGTGGT	3180	0.0	5.305318	94-95
GTGTAGA	6640	0.0	5.117386	94-95
CTCGGTG	3925	0.0	5.085338	94-95
TAGATCT	5260	0.0	5.014382	94-95