FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005331060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35809419
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGTGT689050.012.144507120
CGTCGTG748650.011.931416120
TCGTGTA611700.011.795976120
CGTGTAG566750.011.13215120
AGCGTCG914750.011.129901120
GCGTCGT816900.011.110939120
GCGTCGG65850.010.665911120
AGAGCGT1146050.010.502161120
AAGAGCG1298200.010.348713120
GAGCGTC1053050.010.340848120
ATCGGAA1965900.09.982088120
TCGGAAG1853300.09.824141120
GTGTAGG605250.09.719841120
CGGAAGA1754600.09.692512120
GATCGGA2106700.09.579942120
AGATCGG2304950.09.367999120
TAGATCG249950.08.646039120
CAGATCG1073650.08.571312120
GTAGGGA553500.08.502885120
GAAGAGC1791100.08.392326120
Produced by FastQC (version 0.11.5)