FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005331085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17879269
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC23500.019.3994358
ACCCGTC83400.014.150084120
TTCCGAT34450.014.1038597
CGTCTGA603750.013.413254120
ACGTCTG677700.012.926904120
ACACGTC833250.012.3346615120
CACGTCT761800.012.298088120
TCTGAAC590100.011.631835120
CACACGT953500.011.631559120
GCACACG1051400.011.619383120
GTCTGAA650300.011.305009120
CGTCCCG60300.011.183293120
ACGCTCT40850.011.0172111
TGAACTC509500.010.753905120
GAACTCC451300.010.673176120
GAGCACA1382200.010.537413120
CCGATCT44600.010.4906669
AGCACAC1242150.010.426423120
CACCCGT100700.010.194825118-119
AGAGCAC1499900.010.180191120
Produced by FastQC (version 0.11.5)