FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140783034
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG331300.025.764196120
CGTGTAG5317350.013.970536120
GTGTAGG5027550.013.440068120
TCGTGTA5869550.013.278424120
GTAGGGA4067500.013.059183120
TGTAGGG4750400.012.987528120
GTCGTGT6640450.012.959901120
CGTCGTG7414350.012.9512205120
TAGGGAA3812800.012.887041120
AGCGTCG9264850.012.322428120
GAGTGTA1417200.011.956826120
GAGCGTC10467400.011.803704120
GCGTCGT8186300.011.602274120
AAGAGCG12958150.011.062268120
AGAGCGT11493450.010.8618120
AGTGTAG1354700.010.579649120
CGGAAGA17117950.09.616259120
GAAGAGC15494750.09.564533120
TCGGAAG18357400.09.355722120
ATCGGAA19623500.09.280735120
Produced by FastQC (version 0.11.5)