FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56685345
Sequences flagged as poor quality0
Sequence length126
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA1770650.09.427082120
ACGTCTG1925050.09.231302120
CACGTCT2115100.09.128341120
ACACGTC2237500.09.000645120
GCACACG2676850.08.824544120
CACACGT2492000.08.804463120
AGCACAC3138900.08.318432120
CGGAAGA4572050.08.262616120
GAGCACA3421300.08.22538120
AGAGCAC3631400.08.132814120
TCGGAAG4847450.08.043057120
ATCGGAA5132850.08.0396185120
GATCGGA5453450.07.932733120
AGATCGG5852550.07.8231993120
GAAGAGC4358700.07.7172594120
TAGATCG1015100.07.687608120
AAGAGCA4189750.07.609916120
GTCTGAA2016200.07.603503120
AAGATCG1633250.07.497237120
GAACTCC1548450.07.4291472120
Produced by FastQC (version 0.11.5)