FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005331101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50101348
Sequences flagged as poor quality0
Sequence length126
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA1476900.011.7434225120
ACGTCTG1655700.011.686866120
ACACGTC1996050.011.619661120
CACGTCT1838450.011.409881120
CGTTTCG201300.011.282406120
GTCACGT385250.011.258849120
AGTCACG413350.010.988984120
GCACACG2510050.010.819463120
CACACGT2283400.010.745746120
AGCACAC2959950.010.096922120
GTCTGAA1661300.010.091815120
GAGCACA3284700.010.035859120
TCTGAAC1498250.09.939587120
AGAGCAC3545250.09.785981120
CGGAAGA4741050.09.512166120
TCGGAAG5095800.09.450525120
ATCGGAA5461300.09.390544120
CTGAACT1470950.09.317248120
GAAGAGC4344650.09.247196120
GTTTCGG234700.09.189123120
Produced by FastQC (version 0.11.5)