FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005331130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54679310
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTGTA739700.013.429071120
CGTCGTG916450.013.158944120
AGCGTCG1152350.012.956355120
CGTGTAG677800.012.9187975120
GTCGTGT835800.012.790388120
GCGTCGT1012350.012.511576120
GAGCGTC1342500.012.355931120
AGAGCGT1498300.011.868771120
AAGAGCG1741300.011.62656120
TCGGAAG2551600.011.088342120
GTGTAGG742550.010.9349575120
CGGAAGA2373950.010.726559120
ATCGGAA2733000.010.673199120
GATCGGA2963550.010.592692120
GCGTCGG92650.010.501122120
AGATCGG3272100.010.383069120
TAGATCG1013500.09.724134120
GTAGGGA654300.09.674528120
TGTAGGG782000.09.622998120
AAGATCG1178800.09.354029120
Produced by FastQC (version 0.11.5)