FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67409884
Sequences flagged as poor quality0
Sequence length126
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG701050.012.7869215120
GCGTCGT613150.012.594364120
CGTCGTG561750.012.497041120
TCGTGTA484600.012.493157120
GAGCGTC842150.011.941229120
GTCGTGT531850.011.766832120
CGTGTAG445200.011.68499120
AGAGCGT942700.011.488627120
AAGAGCG1098850.011.139256120
GATCGGA1792900.010.538553120
ATCGGAA1687050.010.4635515120
TCGGAAG1602450.010.416865120
CGGAAGA1525050.010.198009120
AGATCGG1976550.010.124006120
TAGATCG477050.08.779221120
CAGATCG691950.08.376582120
AAGATCG677950.08.230945120
GTGTAGG587700.08.014536120
GAAGAGC1773350.07.7922683120
GCGTCGG71350.07.7367444120
Produced by FastQC (version 0.11.5)