FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62385933
Sequences flagged as poor quality0
Sequence length126
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA2233600.09.098416120
ACACGTC2813650.09.001219120
ACGTCTG2426350.08.907304120
CACACGT3106850.08.8103075120
CACGTCT2646400.08.806023120
GCACACG3340150.08.721261120
AGCACAC3871050.08.083168120
GAGCACA4190400.07.901004120
CGGAAGA5557800.07.854993120
TCGGAAG5898550.07.8325195120
AGAGCAC4432650.07.8130193120
ATCGGAA6243550.07.7370296120
GTCTGAA2499950.07.617836120
GAAGAGC5260800.07.6038704120
GATCGGA6616250.07.5424223120
TCTGAAC2328800.07.4330945120
AAGAGCA5086850.07.425109120
TAGATCG958650.07.3291373120
AGATCGG7069150.07.309587120
GAACTCC1947700.07.1130834120
Produced by FastQC (version 0.11.5)