FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143844880
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA2610100.09.5341120
AGCGTCG1365900.09.471804120
GATCGGA2768400.09.316234120
AGATCGG3081800.08.978288120
TCGTGTA961850.08.927608120
GCGTCGT1212650.08.862637120
CGTCGTG1178300.08.805255120
AGAGCGT1767950.08.52614120
TCGGAAG2637550.08.447477120
GTCGTGT1103200.08.4092655120
GAGCGTC1695650.08.192522120
AAGAGCG2032100.08.111784120
CGTGTAG993000.08.103682120
TAGATCG569000.08.04665120
CGGAAGA2690350.07.855673120
CAGATCG1452050.07.455174120
AAGATCG909550.06.366541120
GAGATCG1454900.06.3269587120
GTGTAGG1310300.05.6329665120
GAAGAGC3636450.05.306904120
Produced by FastQC (version 0.11.5)