FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72350107
Sequences flagged as poor quality0
Sequence length126
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA1939150.010.889361120
CACGTCT2371450.010.587183120
ACGTCTG2139700.010.504506120
ACACGTC2529100.010.355648120
CACACGT2871250.010.215969120
GCACACG3076800.09.854325120
AGCACAC3690950.08.948516120
AGAGCAC4314850.08.822269120
CGGAAGA5555100.08.718513120
GAGCACA4039750.08.6333275120
TCGGAAG5907850.08.593267120
TCTGAAC2105550.08.527896120
GTCTGAA2279700.08.510142120
ATCGGAA6290500.08.338474120
GATCGGA6707150.08.25396120
GAAGAGC5248800.08.142402120
AAGAGCA5051750.07.99411120
AGATCGG7190800.07.8411098120
CTGAACT2094750.07.827609120
GAACTCC1667750.07.7419534120
Produced by FastQC (version 0.11.5)