FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005331269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109074
Sequences flagged as poor quality0
Sequence length126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGAGC600.001248755440.0131533
TAGAGCA750.003741135631.9958424
TGTCAGC800.00649886118.74756416-17
TTCACTT1700.00916521617.652862
GAGATCG2755.1798974E-415.2847595120
GAGCACA4902.7731393E-411.029091120
ATCGGAA7106.301507E-710.994571120
GCACACG3400.00562059138.830481120
AGATCGG7851.2329292E-78.414267120
AGAGCAC4752.6426911E-58.20946118-119
GATCGGA7302.8464456E-77.3962994118-119
AAGAGCA6250.00529050456.725294120
CGGAAGA6401.451794E-46.5616474114-115
GAAGAGC6450.00113515816.0457263116-117
TCGGAAG6500.00124548155.999221114-115
Produced by FastQC (version 0.11.5)