FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005331270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109074
Sequences flagged as poor quality0
Sequence length126
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTTAAG800.005143694629.980177
TCGCCTT450.009120692526.673596-97
GAGCGTC3752.272358E-514.410303120
ATCGGAA5857.376748E-712.316499120
AAGATCG2057.857486E-411.713005118-119
AGAGCGT4053.49129E-69.634308118-119
AAGAGCG4409.651163E-59.552284120
AGATCGG6453.4995537E-89.308981120
GATCGGA6051.11855115E-78.433847118-119
CGGAAGA5157.2119685E-57.5747557114-115
TCGGAAG5450.00113364166.607197114-115
GAAGAGC6004.7135804E-46.5016656116-117
Produced by FastQC (version 0.11.5)