FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62276214
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1288750.011.335378120
AGATCGG1438600.010.4510975120
ATCGGAA1194700.010.412676120
ACACGTC447950.010.311881120
TAGATCG453500.09.894286120
TCGGAAG1176550.09.654333120
CACGTCT467450.09.496211120
CGGAAGA1137550.09.415035120
CACACGT591450.09.241968120
ACGTCTG411200.09.232197120
CGTCTGA348600.08.994649120
GCACACG674000.08.947773120
AAGATCG576050.08.196029120
CAGATCG408700.07.8924303120
AGAGCAC1063050.07.6620874120
AGCACAC927550.07.317828120
GAAGAGC1386000.07.16392120
GAGCACA1027100.06.7723117120
AAGAGCA1411950.06.3685946120
GTCACGA125750.05.875411120
Produced by FastQC (version 0.11.5)